Package: AnthropMMD 4.0.3

AnthropMMD: An R Package for the Mean Measure of Divergence (MMD)

Offers a graphical user interface for the calculation of the mean measure of divergence, with facilities for trait selection and graphical representations <doi:10.1002/ajpa.23336>.

Authors:Frédéric Santos [aut, cre]

AnthropMMD_4.0.3.tar.gz
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AnthropMMD.pdf |AnthropMMD.html✨
AnthropMMD/json (API)
NEWS

# Install 'AnthropMMD' in R:

install.packages('AnthropMMD', repos = c('https://frederic-santos.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://gitlab.com/f-santos/anthropmmd

Datasets:

absolute_freqs - A toy example dataset for mean measures of divergence, in a table format
toyMMD - A toy example dataset for mean measures of divergence

On CRAN:

9 exports 0.66 score 139 dependencies 16 scripts 512 downloads

Last updated 10 months agofrom:7bfb50d9cb. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Aug 26 2024
R-4.5-win	OK	Aug 26 2024
R-4.5-linux	OK	Aug 26 2024
R-4.4-win	OK	Aug 26 2024
R-4.4-mac	OK	Aug 26 2024
R-4.3-win	OK	Aug 26 2024
R-4.3-mac	OK	Aug 26 2024

Exports:binary_to_table mmd mmd_boot plot.anthropmmd_boot plot.anthropmmd_result select_traits start_mmd StartMMD table_relfreq

Dependencies:abind backports base64enc bit bit64 boot broom bslib cachem candisc car carData checkmate class cli clipr cluster codetools colorspace commonmark cowplot cpp11 crayon data.table Deriv digest doBy doParallel dplyr e1071 ellipse evaluate fansi farver fastmap fontawesome forcats foreach foreign Formula fs gdata generics ggplot2 glmnet glue gridExtra gtable gtools haven heplots highr Hmisc hms htmlTable htmltools htmlwidgets httpuv isoband iterators jomo jquerylib jsonlite knitr labeling later lattice lifecycle lme4 magrittr MASS Matrix MatrixModels memoise mgcv mice microbenchmark mime minqa mitml modelr munsell nlme nloptr nnet nnls numDeriv ordinal pan pbkrtest pillar pkgconfig plotrix polynom prettyunits progress promises proxy purrr quantreg R6 rappdirs RColorBrewer Rcpp RcppEigen readr rgl rlang rmarkdown rpart rstudioapi sass scales scatterplot3d shape shiny smacof sourcetools SparseM stringi stringr survival tibble tidyr tidyselect tinytex tzdb ucminf utf8 vctrs viridis viridisLite vroom weights withr wordcloud xfun xtable yaml

An overview of AnthropMMD

Frédéric Santos, <frederic.santos[at]u-bordeaux.fr>

Rendered fromintro_AnthropMMD.Rmdusingknitr::rmarkdownon Aug 26 2024.

Last update: 2023-06-15
Started: 2019-07-04

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
An R package for the Mean Measure of Divergence (MMD)	AnthropMMD-package AnthropMMD
A toy example dataset for mean measures of divergence, in a table format	absolute_freqs
Converts a data frame of binary (i.e., presence/absence) trait information into a table of sample sizes and frequencies.	binary_to_table
Compute MMD values from a table of sample sizes and relative frequencies	mmd
Implementation of Fidalgo et al.'s (2022) method of bootstrap for the Mean Measure of Divergence	mmd_boot
Display a multidimensional scaling (MDS) plot using Fidalgo et al's (2022) bootstrap method for MMD	plot.anthropmmd_boot
Display a multidimensional scaling (MDS) plot with the MMD dissimilarities as input	plot.anthropmmd_result
Select a subset of traits meeting certain criteria	select_traits
An R-Shiny application for the mean measure of divergence	StartMMD start_mmd
Converts a table of sample sizes and frequencies into a table of sample sizes and relative frequencies.	table_relfreq
A toy example dataset for mean measures of divergence, in a binary format	toyMMD